Bodega Harbor is a small shallow natural harbor on the Pacific coast of northern California in the United States, approximately 40 mi (64 km) northwest of San Francisco. The harbor is approximately 2 square miles (5 square km) in area.The harbor is in Sonoma County at 38°19′25″N 123°02′52″W, on the eastern side of Bodega Head and is protected from the main part of Bodega Bay to the south by a narrow sandy spit of land. The village of Bodega Bay sits along the eastern side of the harbor.
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